Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4085PFAM: transport system permease protein; KEGG: sse:Ssed_3735 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (345 aa)    
Predicted Functional Partners:
Swoo_4086
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3736 ABC transporter-related protein.
 
 
 0.993
Swoo_4010
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spl:Spea_3333 ABC transporter related.
 
 
 0.971
Swoo_4079
PFAM: periplasmic binding protein; KEGG: spl:Spea_3374 periplasmic binding protein.
 
 
 0.926
Swoo_4008
PFAM: periplasmic binding protein; KEGG: spl:Spea_3331 periplasmic binding protein.
 
 
 0.924
cobT
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
     
 0.518
cobS
Cobalamin 5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
 
  
 0.491
Swoo_4004
TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spl:Spea_3327 TonB-dependent heme/hemoglobin receptor family protein.
 
  
 0.479
Swoo_3918
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_3414 TonB-dependent receptor.
 
  
 0.408
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
    0.406
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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