STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4086PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3736 ABC transporter-related protein. (279 aa)    
Predicted Functional Partners:
Swoo_4085
PFAM: transport system permease protein; KEGG: sse:Ssed_3735 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.994
Swoo_4009
PFAM: transport system permease protein; KEGG: spl:Spea_3332 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.976
Swoo_4079
PFAM: periplasmic binding protein; KEGG: spl:Spea_3374 periplasmic binding protein.
 
 
 0.975
Swoo_4008
PFAM: periplasmic binding protein; KEGG: spl:Spea_3331 periplasmic binding protein.
 
 
 0.791
Swoo_4641
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: scl:sce5713 cell division cycle protein 48-related protein; Belongs to the AAA ATPase family.
  
     0.571
cobT
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
 
     0.545
Swoo_1431
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRB1124 putative ABC transporter, ATP-binding protein.
 
  
0.530
Swoo_0997
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sse:Ssed_0946 binding-protein-dependent transport systems inner membrane component.
   
  
 0.506
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
 
   
 0.472
Swoo_4106
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3953 ABC transporter-related protein.
 
  
0.468
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.