STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4103PFAM: OsmC family protein; KEGG: pha:PSHAa1933 hypothetical protein. (402 aa)    
Predicted Functional Partners:
Swoo_4102
PFAM: protein of unknown function DUF6 transmembrane; KEGG: mmw:Mmwyl1_1774 protein of unknown function DUF6 transmembrane.
       0.592
Swoo_2546
PFAM: SEC-C motif domain protein; KEGG: sse:Ssed_2054 sec-C motif domain protein.
  
    0.542
Swoo_3331
PFAM: SEC-C motif domain protein; KEGG: sse:Ssed_1324 sec-C motif domain protein.
  
    0.542
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.537
Swoo_3675
PFAM: protein of unknown function DUF819; KEGG: sse:Ssed_3451 protein of unknown function DUF819.
  
     0.443
Swoo_2445
PFAM: protein of unknown function DUF323; KEGG: psa:PST_1444 hypothetical protein.
 
     0.437
Swoo_3054
PFAM: YHS domain protein; KEGG: amr:AM1_3134 hypothetical protein.
  
     0.408
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.