Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_4107PFAM: protein of unknown function DUF214; KEGG: sse:Ssed_3954 protein of unknown function DUF214. (840 aa)    
Predicted Functional Partners:
Swoo_4108
KEGG: spl:Spea_0625 conserved hypothetical protein.
 
     0.948
Swoo_4106
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3953 ABC transporter-related protein.
 
 
 0.905
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.727
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.704
Swoo_1165
KEGG: sse:Ssed_1083 major outer membrane lipoprotein, putative.
    
 
 0.609
lolB
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
    
 
 0.547
Swoo_1431
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRB1124 putative ABC transporter, ATP-binding protein.
  
 
 0.525
Swoo_1899
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_2740 putative macrolide efflux ABC transporter, ATP-binding protein.
  
 
 0.525
Swoo_2021
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mmr:Mmar10_0819 ABC transporter related.
  
 
 0.525
Swoo_4072
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3722 ABC transporter related.
  
 
 0.525
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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