STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4115PFAM: regulatory protein LuxR; KEGG: hne:HNE_2502 transcriptional regulator, LuxR family. (797 aa)    
Predicted Functional Partners:
Swoo_1991
PFAM: regulatory protein LuxR; KEGG: pin:Ping_2984 two component transcriptional regulator, LuxR family protein.
  
   
 0.602
Swoo_0757
PFAM: regulatory protein LuxR; KEGG: slo:Shew_0653 transcriptional regulator, LuxR family.
  
   
 0.463
Swoo_4117
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: spl:Spea_0616 transcriptional regulator, AraC family.
 
     0.440
Swoo_4116
KEGG: spl:Spea_0617 hypothetical protein.
       0.427
Swoo_1880
PFAM: regulatory protein LuxR; KEGG: slo:Shew_1726 transcriptional regulator, LuxR family.
  
   
 0.412
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.