Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4117Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: spl:Spea_0616 transcriptional regulator, AraC family. (341 aa)    
Predicted Functional Partners:
Swoo_4116
KEGG: spl:Spea_0617 hypothetical protein.
 
     0.773
Swoo_0135
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_2491 response regulator receiver protein.
  
     0.518
Swoo_4118
KEGG: sse:Ssed_3965 hypothetical protein.
       0.497
Swoo_4556
KEGG: spl:Spea_0617 hypothetical protein.
  
     0.466
Swoo_2405
Molydopterin dinucleotide-binding region; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hau:Haur_2925 molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
     0.450
Swoo_2406
Hypothetical protein; KEGG: pat:Patl_3336 glutathione S-transferase.
  
     0.449
Swoo_4115
PFAM: regulatory protein LuxR; KEGG: hne:HNE_2502 transcriptional regulator, LuxR family.
 
     0.440
Swoo_2938
KEGG: cps:CPS_3056 hypothetical protein.
  
     0.438
Swoo_0420
KEGG: mkm:Mkms_2796 hypothetical protein.
  
     0.427
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.