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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4128KEGG: sdn:Sden_2968 hypothetical protein. (354 aa)    
Predicted Functional Partners:
Swoo_4129
KEGG: sdn:Sden_2969 hypothetical protein.
      
0.733
Swoo_4126
KEGG: sdn:Sden_2966 hypothetical protein.
       0.652
Swoo_4127
PFAM: peptidase C39 bacteriocin processing; KEGG: sdn:Sden_2967 peptidase C39, bacteriocin processing.
       0.652
Swoo_4125
KEGG: sdn:Sden_2964 hypothetical protein.
       0.435
Swoo_4130
Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: sdn:Sden_2970 sigma-54 factor, interaction region.
       0.426
Swoo_1167
PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: sse:Ssed_1085 peptidoglycan-binding domain 1 protein.
   
    0.400
Swoo_4416
KEGG: sse:Ssed_0545 MSHA biogenesis protein MshM.
   
    0.400
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.