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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4133PFAM: Endonuclease I; KEGG: sse:Ssed_3971 deoxyribonuclease I. (251 aa)    
Predicted Functional Partners:
Swoo_4134
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.795
Swoo_4136
PFAM: Alkaline phosphatase; KEGG: sse:Ssed_3974 alkaline phosphatase; Belongs to the alkaline phosphatase family.
     
 0.632
Swoo_3886
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sse:Ssed_3944 endonuclease/exonuclease/phosphatase.
     
 0.608
gshB-2
KEGG: sse:Ssed_3973 glutathione synthase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase domain protein; glutathione synthetase ATP-binding; RimK domain protein ATP-grasp; Belongs to the prokaryotic GSH synthase family.
       0.599
sprT
PFAM: protein of unknown function DUF335 SprT; SMART: protein of unknown function SprT; KEGG: sse:Ssed_3970 protein of unknown function DUF335, SprT; Belongs to the SprT family.
     
 0.573
Swoo_3996
KEGG: spl:Spea_3468 conserved hypothetical protein.
  
     0.555
Swoo_2811
KEGG: sse:Ssed_1784 hypothetical protein; Belongs to the UPF0319 family.
  
     0.477
Swoo_4131
KEGG: sse:Ssed_3969 hypothetical protein.
       0.465
Swoo_3149
KEGG: spl:Spea_2397 putative serine transporter.
  
     0.462
Swoo_1911
Endonuclease/exonuclease/phosphatase; PFAM: PKD domain containing protein; Endonuclease/exonuclease/phosphatase; KEGG: slo:Shew_2170 endonuclease/exonuclease/phosphatase.
     
 0.419
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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