STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4141PFAM: protein of unknown function DUF342; KEGG: sse:Ssed_3979 protein of unknown function DUF342. (556 aa)    
Predicted Functional Partners:
Swoo_1812
KEGG: sse:Ssed_2832 hypothetical protein.
 
    0.684
Swoo_3541
PFAM: type IV pilus assembly PilZ; KEGG: sse:Ssed_3371 type IV pilus assembly PilZ.
  
     0.595
Swoo_1804
KEGG: sse:Ssed_2840 hypothetical protein.
  
     0.550
Swoo_2394
KEGG: sse:Ssed_2227 hypothetical protein.
  
     0.550
Swoo_4204
PFAM: CheC domain protein; KEGG: sse:Ssed_0765 putative chemotaxis protein CheX.
  
     0.544
Swoo_0070
PFAM: glycosyl transferase family 9; KEGG: slo:Shew_3702 glycosyl transferase, family 9.
  
    0.533
Swoo_4218
PFAM: Sel1 domain protein repeat-containing protein; KEGG: sse:Ssed_0751 Sel1 domain protein repeat-containing protein.
  
     0.509
Swoo_4142
PFAM: peptidase M50; KEGG: sse:Ssed_3980 peptidase M50.
       0.495
Swoo_3828
PFAM: Disulphide bond formation protein DsbB; KEGG: spl:Spea_3914 disulphide bond formation protein DsbB.
   
    0.492
rsmC
rRNA (guanine-N(2)-)-methyltransferase; Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle; Belongs to the methyltransferase superfamily. RsmC family.
       0.489
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.