STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4141PFAM: protein of unknown function DUF342; KEGG: sse:Ssed_3979 protein of unknown function DUF342. (556 aa)    
Predicted Functional Partners:
Swoo_1812
KEGG: sse:Ssed_2832 hypothetical protein.
 
    0.678
Swoo_3541
PFAM: type IV pilus assembly PilZ; KEGG: sse:Ssed_3371 type IV pilus assembly PilZ.
  
     0.595
Swoo_1804
KEGG: sse:Ssed_2840 hypothetical protein.
  
     0.550
Swoo_2394
KEGG: sse:Ssed_2227 hypothetical protein.
  
     0.550
Swoo_0070
PFAM: glycosyl transferase family 9; KEGG: slo:Shew_3702 glycosyl transferase, family 9.
  
    0.546
Swoo_4204
PFAM: CheC domain protein; KEGG: sse:Ssed_0765 putative chemotaxis protein CheX.
  
     0.544
Swoo_4218
PFAM: Sel1 domain protein repeat-containing protein; KEGG: sse:Ssed_0751 Sel1 domain protein repeat-containing protein.
  
     0.509
Swoo_4142
PFAM: peptidase M50; KEGG: sse:Ssed_3980 peptidase M50.
       0.495
Swoo_2170
PFAM: SirA family protein; KEGG: sse:Ssed_2436 SirA family protein; Belongs to the sulfur carrier protein TusA family.
 
     0.487
Swoo_3474
PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_3325 OmpA/MotB domain protein.
 
    0.478
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.