STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4142PFAM: peptidase M50; KEGG: sse:Ssed_3980 peptidase M50. (380 aa)    
Predicted Functional Partners:
Swoo_1987
PFAM: nucleoside recognition domain protein; KEGG: sse:Ssed_2643 nucleoside recognition domain protein.
  
  
 0.728
Swoo_3870
KEGG: sse:Ssed_3933 hypothetical protein.
  
     0.561
Swoo_0726
KEGG: sse:Ssed_3834 hypothetical protein.
  
     0.525
Swoo_1373
PFAM: conserved hypothetical protein; KEGG: cps:CPS_0514 tryptophan-rich conserved hypothetical protein.
  
     0.497
Swoo_4141
PFAM: protein of unknown function DUF342; KEGG: sse:Ssed_3979 protein of unknown function DUF342.
       0.495
Swoo_4061
KEGG: sbn:Sbal195_3516 putative lipoprotein.
  
     0.453
Swoo_0551
KEGG: sse:Ssed_4086 hypothetical protein.
  
     0.449
Swoo_3306
TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: sse:Ssed_1346 sigma 54 modulation protein/ribosomal protein S30EA.
 
     0.428
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.