Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4151PFAM: porin Gram-negative type; KEGG: spl:Spea_0589 porin gram-negative type. (348 aa)    
Predicted Functional Partners:
Swoo_2146
KEGG: sse:Ssed_2470 hypothetical protein.
  
     0.706
Swoo_4467
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0489 transcriptional regulator, CadC.
  
   
 0.699
Swoo_1647
PFAM: VacJ family lipoprotein; KEGG: sse:Ssed_3037 surface lipoprotein-like protein.
   
 
 0.662
Swoo_4390
PFAM: Ig domain protein group 1 domain protein; KEGG: spl:Spea_3742 Ig domain protein group 1 domain protein.
  
     0.654
Swoo_4131
KEGG: sse:Ssed_3969 hypothetical protein.
  
     0.643
Swoo_3124
KEGG: spl:Spea_2697 decaheme cytochrome c.
  
     0.640
Swoo_3067
Serine/threonine protein kinase; PFAM: NERD domain protein; KEGG: sse:Ssed_1583 hypothetical protein.
  
     0.630
Swoo_0232
KEGG: sse:Ssed_0228 outer membrane protein.
  
 
   0.624
Swoo_3089
KEGG: sse:Ssed_1563 hypothetical protein; Belongs to the UPF0319 family.
 
     0.614
Swoo_2888
KEGG: sse:Ssed_1703 hypothetical protein.
  
     0.613
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.