Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_4152PFAM: porin Gram-negative type; KEGG: slo:Shew_3260 porin, gram-negative type. (342 aa)    
Predicted Functional Partners:
Swoo_2793
PFAM: porin Gram-negative type; KEGG: hha:Hhal_2050 porin, gram-negative type.
  
  
  0.825
Swoo_2146
KEGG: sse:Ssed_2470 hypothetical protein.
  
     0.692
Swoo_4467
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0489 transcriptional regulator, CadC.
  
   
 0.685
Swoo_1647
PFAM: VacJ family lipoprotein; KEGG: sse:Ssed_3037 surface lipoprotein-like protein.
   
 
 0.662
Swoo_4131
KEGG: sse:Ssed_3969 hypothetical protein.
  
     0.662
Swoo_4390
PFAM: Ig domain protein group 1 domain protein; KEGG: spl:Spea_3742 Ig domain protein group 1 domain protein.
  
     0.640
Swoo_3124
KEGG: spl:Spea_2697 decaheme cytochrome c.
  
     0.626
Swoo_3068
PFAM: protein of unknown function DUF1260; KEGG: sse:Ssed_1582 protein of unknown function DUF1260.
  
     0.621
Swoo_2888
KEGG: sse:Ssed_1703 hypothetical protein.
  
     0.618
Swoo_1323
KEGG: sse:Ssed_1223 hypothetical protein.
  
     0.613
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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