STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4155SMART: serine/threonine protein kinase; KEGG: sse:Ssed_4012 serine/threonine protein kinase. (623 aa)    
Predicted Functional Partners:
Swoo_1010
KEGG: sse:Ssed_0960 hypothetical protein.
  
     0.563
Swoo_3356
PFAM: protein of unknown function DUF416; KEGG: sse:Ssed_1284 protein of unknown function DUF416.
  
     0.543
Swoo_1323
KEGG: sse:Ssed_1223 hypothetical protein.
  
     0.525
Swoo_0521
KEGG: sse:Ssed_4102 hypothetical protein.
  
     0.512
Swoo_2278
PFAM: dehydrogenase E1 component; KEGG: sse:Ssed_2329 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring).
 
     0.497
Swoo_2280
Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: sse:Ssed_2327 dihydrolipoyllysine-residue (2-methylpropanoyl)transferase.
 
     0.482
Swoo_0379
KEGG: sse:Ssed_4221 hypothetical protein.
 
     0.479
Swoo_2856
PFAM: RDD domain containing protein; KEGG: sse:Ssed_1722 RDD domain containing protein.
  
     0.472
Swoo_2627
PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: sse:Ssed_1963 serine/threonine protein kinase.
 
 
 0.471
Swoo_3090
KEGG: slo:Shew_2488 hypothetical protein.
  
     0.471
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.