STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4159PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: spl:Spea_3518 peptidase S9 prolyl oligopeptidase active site domain protein. (827 aa)    
Predicted Functional Partners:
Swoo_3465
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sse:Ssed_3317 peptidase S9, prolyl oligopeptidase active site domain protein.
  
     0.711
Swoo_0158
PFAM: peptidase M14 carboxypeptidase A; KEGG: sse:Ssed_0178 peptidase M14, carboxypeptidase A.
  
     0.688
Swoo_4346
KEGG: sse:Ssed_0607 hypothetical protein.
  
     0.681
Swoo_3296
KEGG: spl:Spea_2898 conserved hypothetical protein.
  
     0.662
Swoo_3461
KEGG: sse:Ssed_3312 hypothetical protein.
  
     0.656
Swoo_3370
KEGG: spl:Spea_0781 conserved hypothetical protein.
  
     0.638
Swoo_3238
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sse:Ssed_1443 amidohydrolase.
  
     0.627
Swoo_4321
KEGG: sse:Ssed_0628 hypothetical protein.
  
     0.626
Swoo_2709
KEGG: sse:Ssed_1878 hypothetical protein.
  
     0.624
Swoo_1323
KEGG: sse:Ssed_1223 hypothetical protein.
  
     0.606
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.