Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4183PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sse:Ssed_0785 glycerophosphoryl diester phosphodiesterase. (235 aa)    
Predicted Functional Partners:
Swoo_1026
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sbn:Sbal195_3775 glycerophosphoryl diester phosphodiesterase.
     
 0.927
Swoo_0051
Lysophospholipase; PFAM: alpha/beta hydrolase fold; KEGG: sse:Ssed_0088 lysophospholipase.
    
 0.904
Swoo_4182
PFAM: MscS Mechanosensitive ion channel; KEGG: sse:Ssed_0786 MscS mechanosensitive ion channel.
       0.783
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
 
  
 0.728
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
 0.657
Swoo_4181
PFAM: protein of unknown function DUF6 transmembrane; KEGG: sse:Ssed_0787 protein of unknown function DUF6, transmembrane.
       0.622
aqpZ
MIP family channel protein; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.567
rsgA
Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
       0.562
Swoo_4358
PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_0595 FAD dependent oxidoreductase.
 
 
 0.549
Swoo_0935
PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_0836 FAD dependent oxidoreductase.
 
 
 0.538
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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