Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4196KEGG: sse:Ssed_0773 hypothetical protein. (249 aa)    
Predicted Functional Partners:
Swoo_4197
KEGG: sse:Ssed_0772 hypothetical protein.
       0.834
Swoo_4198
PFAM: protein of unknown function DUF461; KEGG: sse:Ssed_0771 protein of unknown function DUF461.
  
    0.765
Swoo_1887
KEGG: sse:Ssed_2751 hypothetical protein.
  
     0.725
Swoo_2296
KEGG: sse:Ssed_2314 hypothetical protein.
  
     0.672
Swoo_1323
KEGG: sse:Ssed_1223 hypothetical protein.
  
     0.623
Swoo_3090
KEGG: slo:Shew_2488 hypothetical protein.
  
     0.619
Swoo_2553
PFAM: Rhomboid family protein; KEGG: sse:Ssed_2047 rhomboid family protein.
  
     0.600
Swoo_3074
SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_1576 tetratricopeptide domain protein.
  
    0.595
Swoo_0379
KEGG: sse:Ssed_4221 hypothetical protein.
  
 
 
 0.587
Swoo_4151
PFAM: porin Gram-negative type; KEGG: spl:Spea_0589 porin gram-negative type.
  
 
   0.551
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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