Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4197KEGG: sse:Ssed_0772 hypothetical protein. (323 aa)    
Predicted Functional Partners:
Swoo_4196
KEGG: sse:Ssed_0773 hypothetical protein.
       0.834
Swoo_4198
PFAM: protein of unknown function DUF461; KEGG: sse:Ssed_0771 protein of unknown function DUF461.
       0.757
Swoo_1975
PFAM: CreA family protein; KEGG: spl:Spea_2522 CreA family protein.
  
    0.525
Swoo_4199
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sse:Ssed_0770 enoyl-CoA hydratase/isomerase.
       0.507
Swoo_2144
PFAM: glutaredoxin 2; KEGG: spl:Spea_1947 glutaredoxin 2.
  
     0.493
Swoo_1328
KEGG: sse:Ssed_1228 hypothetical protein.
  
     0.476
cysZ
Protein of unknown function DUF540; High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway; Belongs to the CysZ family.
  
     0.405
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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