Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4204PFAM: CheC domain protein; KEGG: sse:Ssed_0765 putative chemotaxis protein CheX. (204 aa)    
Predicted Functional Partners:
Swoo_1636
PFAM: response regulator receiver; KEGG: sse:Ssed_3048 response regulator receiver protein.
 
 
 0.952
Swoo_3051
PFAM: response regulator receiver; KEGG: bte:BTH_II0155 chemotaxis response regulator.
   
 0.941
Swoo_4352
PFAM: response regulator receiver; KEGG: sse:Ssed_0601 response regulator receiver protein.
  
  
  0.917
Swoo_0167
PFAM: response regulator receiver; KEGG: saz:Sama_3494 response regulator receiver protein.
   
 
  0.903
Swoo_1804
KEGG: sse:Ssed_2840 hypothetical protein.
  
   
 0.744
Swoo_4328
CheC, inhibitor of MCP methylation; PFAM: response regulator receiver; KEGG: sse:Ssed_0622 response regulator receiver protein.
 
  
 0.732
Swoo_4218
PFAM: Sel1 domain protein repeat-containing protein; KEGG: sse:Ssed_0751 Sel1 domain protein repeat-containing protein.
  
     0.730
Swoo_3541
PFAM: type IV pilus assembly PilZ; KEGG: sse:Ssed_3371 type IV pilus assembly PilZ.
  
     0.644
Swoo_1812
KEGG: sse:Ssed_2832 hypothetical protein.
  
     0.634
Swoo_2062
KEGG: sse:Ssed_2604 hypothetical protein.
  
     0.614
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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