Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_4228PFAM: BolA family protein; KEGG: sse:Ssed_0738 BolA family protein; Belongs to the BolA/IbaG family. (96 aa)    
Predicted Functional Partners:
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
  
 0.870
Swoo_4231
PFAM: Mammalian cell entry related domain protein; KEGG: sse:Ssed_0735 mammalian cell entry related domain protein.
     
 0.854
Swoo_4230
PFAM: toluene tolerance family protein; KEGG: sse:Ssed_0736 toluene tolerance family protein.
       0.834
Swoo_4229
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sse:Ssed_0737 SpoIIAA family protein.
       0.824
Swoo_4232
PFAM: protein of unknown function DUF140; KEGG: sse:Ssed_0734 protein of unknown function DUF140.
       0.700
Swoo_2160
TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: sse:Ssed_2444 glutaredoxin-like protein; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 
 
 0.694
Swoo_4233
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_0733 ABC transporter-related protein.
     
 0.643
rpsU
PFAM: ribosomal protein S21; KEGG: sse:Ssed_1075 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
    0.569
Swoo_2037
PFAM: protein of unknown function DUF177; KEGG: sse:Ssed_2629 protein of unknown function DUF177.
  
    0.511
Swoo_4235
KpsF/GutQ family protein; KEGG: sse:Ssed_0731 arabinose-5-phosphate isomerase; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS).
  
    0.481
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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