Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4229PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sse:Ssed_0737 SpoIIAA family protein. (100 aa)    
Predicted Functional Partners:
Swoo_4233
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_0733 ABC transporter-related protein.
  
 0.994
Swoo_4230
PFAM: toluene tolerance family protein; KEGG: sse:Ssed_0736 toluene tolerance family protein.
  
 
 0.993
Swoo_4231
PFAM: Mammalian cell entry related domain protein; KEGG: sse:Ssed_0735 mammalian cell entry related domain protein.
  
 0.993
Swoo_4232
PFAM: protein of unknown function DUF140; KEGG: sse:Ssed_0734 protein of unknown function DUF140.
  
 0.987
Swoo_4228
PFAM: BolA family protein; KEGG: sse:Ssed_0738 BolA family protein; Belongs to the BolA/IbaG family.
       0.824
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.807
Swoo_1647
PFAM: VacJ family lipoprotein; KEGG: sse:Ssed_3037 surface lipoprotein-like protein.
     
 0.652
Swoo_4123
PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sse:Ssed_3967 carbamoyl-phosphate synthase L chain, ATP-binding.
   
    0.486
Swoo_4235
KpsF/GutQ family protein; KEGG: sse:Ssed_0731 arabinose-5-phosphate isomerase; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS).
     
 0.461
Swoo_4236
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
     
 0.405
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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