Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4231PFAM: Mammalian cell entry related domain protein; KEGG: sse:Ssed_0735 mammalian cell entry related domain protein. (155 aa)    
Predicted Functional Partners:
Swoo_4230
PFAM: toluene tolerance family protein; KEGG: sse:Ssed_0736 toluene tolerance family protein.
 
 0.999
Swoo_4232
PFAM: protein of unknown function DUF140; KEGG: sse:Ssed_0734 protein of unknown function DUF140.
 
 0.999
Swoo_4233
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_0733 ABC transporter-related protein.
 
 0.998
Swoo_4229
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sse:Ssed_0737 SpoIIAA family protein.
  
 0.993
Swoo_1647
PFAM: VacJ family lipoprotein; KEGG: sse:Ssed_3037 surface lipoprotein-like protein.
 
   
 0.888
Swoo_4228
PFAM: BolA family protein; KEGG: sse:Ssed_0738 BolA family protein; Belongs to the BolA/IbaG family.
     
 0.854
Swoo_1700
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sse:Ssed_2945 anti-sigma-factor antagonist.
  
 
 0.850
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
     
 0.820
Swoo_3474
PFAM: OmpA/MotB domain protein; KEGG: sse:Ssed_3325 OmpA/MotB domain protein.
   
   0.705
lptC
Protein of unknown function DUF1239; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
  
  
 0.495
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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