STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4233PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_0733 ABC transporter-related protein. (271 aa)    
Predicted Functional Partners:
Swoo_4232
PFAM: protein of unknown function DUF140; KEGG: sse:Ssed_0734 protein of unknown function DUF140.
 
 0.999
Swoo_4231
PFAM: Mammalian cell entry related domain protein; KEGG: sse:Ssed_0735 mammalian cell entry related domain protein.
 
 0.998
Swoo_4229
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sse:Ssed_0737 SpoIIAA family protein.
  
 0.994
Swoo_4230
PFAM: toluene tolerance family protein; KEGG: sse:Ssed_0736 toluene tolerance family protein.
 
 
 0.970
Swoo_3105
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: sse:Ssed_1549 oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
 
    
0.887
Swoo_1700
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sse:Ssed_2945 anti-sigma-factor antagonist.
   
 
 0.870
Swoo_4228
PFAM: BolA family protein; KEGG: sse:Ssed_0738 BolA family protein; Belongs to the BolA/IbaG family.
     
 0.643
Swoo_1647
PFAM: VacJ family lipoprotein; KEGG: sse:Ssed_3037 surface lipoprotein-like protein.
 
   
 0.639
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
     
 0.635
lptC
Protein of unknown function DUF1239; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
     
 0.606
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.