STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4241TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: sse:Ssed_0725 sigma 54 modulation protein/ribosomal protein S30EA. (95 aa)    
Predicted Functional Partners:
Swoo_4242
TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: sse:Ssed_0724 PTS IIA-like nitrogen-regulatory protein PtsN.
 
  
 0.939
Swoo_4243
Conserved hypothetical protein; Displays ATPase and GTPase activities.
 
  
 0.904
rmf
Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
   
 
 0.886
rpmC
PFAM: ribosomal protein L29; KEGG: sse:Ssed_4309 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
 
 0.841
rpmI
PFAM: ribosomal protein L35; KEGG: sfr:Sfri_2026 ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
 
 
   0.839
Swoo_4244
TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: sse:Ssed_0722 phosphocarrier protein NPR.
  
  
 0.832
rpmA
PFAM: ribosomal protein L27; KEGG: shm:Shewmr7_3124 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.831
rpsU
PFAM: ribosomal protein S21; KEGG: sse:Ssed_1075 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.830
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.830
rpmG
PFAM: ribosomal protein L33; KEGG: sse:Ssed_0387 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.827
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.