Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4250PFAM: glycosyl transferase family 39; KEGG: sse:Ssed_0714 hypothetical protein. (463 aa)    
Predicted Functional Partners:
Swoo_4251
PFAM: glycosyl transferase family 2; KEGG: sse:Ssed_0713 conserved hypothetical glycosyl transferase.
 
  
 0.978
Swoo_4249
PFAM: GtrA family protein; KEGG: sse:Ssed_0715 hypothetical protein.
  
  
 0.863
Swoo_1995
PFAM: glycosyl transferase family 2; KEGG: pmc:P9515_14031 hypothetical protein.
 
  
 0.747
Swoo_4253
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_0711 integral membrane sensor signal transduction histidine kinase.
     
 0.660
Swoo_4252
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_0712 two component transcriptional regulator, winged helix family.
 
   
 0.606
Swoo_4303
KEGG: cvi:CV_3928 hypothetical protein.
  
     0.526
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.503
Swoo_4248
PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: sse:Ssed_0716 OmpA/MotB domain protein.
     
 0.493
Swoo_0463
PFAM: Inner membrane CreD family protein; KEGG: sse:Ssed_4153 inner membrane protein, putative.
   
    0.449
Swoo_2532
PFAM: sulfatase; protein of unknown function DUF1705; KEGG: slo:Shew_2041 protein of unknown function DUF1705.
  
  
 0.444
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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