Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4251PFAM: glycosyl transferase family 2; KEGG: sse:Ssed_0713 conserved hypothetical glycosyl transferase. (339 aa)    
Predicted Functional Partners:
Swoo_4250
PFAM: glycosyl transferase family 39; KEGG: sse:Ssed_0714 hypothetical protein.
 
  
 0.978
Swoo_4249
PFAM: GtrA family protein; KEGG: sse:Ssed_0715 hypothetical protein.
       0.789
Swoo_4253
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_0711 integral membrane sensor signal transduction histidine kinase.
   
   0.668
Swoo_4252
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_0712 two component transcriptional regulator, winged helix family.
       0.535
Swoo_4248
PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: sse:Ssed_0716 OmpA/MotB domain protein.
  
    0.493
Swoo_1586
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: sse:Ssed_3098 UDP-bacillosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.432
Swoo_1670
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: vvy:VV0363 pilin glycosylation protein; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.432
Swoo_2184
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sse:Ssed_2422 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.432
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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