Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4261PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: ilo:IL1172 secreted dipeptidyl aminopeptidase. (652 aa)    
Predicted Functional Partners:
Swoo_4262
Hypothetical protein.
       0.773
Swoo_1126
Peptidase S15; KEGG: spl:Spea_2277 peptidase S15.
  
     0.769
Swoo_1208
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: spl:Spea_0990 peptidase S9 prolyl oligopeptidase active site domain protein.
  
     0.521
Swoo_0898
KEGG: mmr:Mmar10_1711 coenzyme PQQ synthesis protein B.
 
  
 0.475
Swoo_4263
PFAM: protein of unknown function DUF1287; KEGG: hch:HCH_06899 hypothetical protein.
       0.436
Swoo_0904
PFAM: beta-lactamase; KEGG: spc:Sputcn32_0856 beta-lactamase.
  
     0.408
pqqC
Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
  
    0.403
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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