STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4263PFAM: protein of unknown function DUF1287; KEGG: hch:HCH_06899 hypothetical protein. (205 aa)    
Predicted Functional Partners:
Swoo_0028
KEGG: hch:HCH_00711 hypothetical protein.
  
     0.682
Swoo_3899
KEGG: sde:Sde_3050 hypothetical protein.
  
     0.582
Swoo_2751
PFAM: Heme NO binding domain protein; KEGG: hch:HCH_03700 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase.
  
     0.515
Swoo_0463
PFAM: Inner membrane CreD family protein; KEGG: sse:Ssed_4153 inner membrane protein, putative.
  
     0.501
Swoo_3901
SMART: low molecular weight phosphotyrosine protein phosphatase; KEGG: hch:HCH_00421 predicted protein tyrosine phosphatase.
  
     0.481
Swoo_2229
KEGG: sse:Ssed_2356 membrane protein-like protein.
 
     0.474
fumC
Fumarate lyase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.452
Swoo_1481
Hypothetical protein; KEGG: btr:Btr_0394 filamentous hemagglutinin.
  
     0.447
Swoo_3975
PFAM: MltA-interacting MipA family protein; KEGG: sbl:Sbal_0752 MltA-interacting MipA family protein.
  
     0.439
Swoo_4261
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: ilo:IL1172 secreted dipeptidyl aminopeptidase.
       0.436
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.