STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4271KEGG: cps:CPS_2663 hypothetical protein. (124 aa)    
Predicted Functional Partners:
Swoo_1893
KEGG: sse:Ssed_2745 methyl-accepting chemotaxis protein.
  
     0.675
Swoo_2524
TIGRFAM: type VI secretion system FHA domain protein; PFAM: Forkhead-associated protein; KEGG: vch:VCA0112 hypothetical protein.
  
     0.550
Swoo_1892
PFAM: beta-lactamase domain protein; KEGG: sse:Ssed_2746 beta-lactamase domain protein.
  
     0.529
Swoo_1348
KEGG: sse:Ssed_1248 hypothetical protein.
  
     0.467
Swoo_2429
PFAM: integrase family protein; KEGG: sse:Ssed_2207 phage integrase family protein.
  
     0.449
Swoo_2523
KEGG: plu:plu0366 hypothetical protein.
  
     0.444
Swoo_4403
KEGG: sdn:Sden_3335 hypothetical protein.
  
     0.425
Swoo_4272
KEGG: pat:Patl_3535 uncharacterized membrane-anchored protein-like.
       0.423
Swoo_4270
PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_0689 transport protein of the major facilitator.
       0.402
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.