STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4274KEGG: cps:CPS_0687 hypothetical protein. (262 aa)    
Predicted Functional Partners:
Swoo_4275
KEGG: pat:Patl_1545 hypothetical protein.
 
     0.566
Swoo_3939
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccr:CC_0970 TonB-dependent receptor.
  
     0.552
Swoo_1879
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: sse:Ssed_2760 tetratricopeptide TPR_2 repeat protein.
  
     0.533
Swoo_1085
KEGG: cps:CPS_2167 hypothetical protein.
  
     0.503
Swoo_3795
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0701 transcriptional regulator, CadC.
  
     0.498
Swoo_2544
PFAM: peptidase M2 peptidyl-dipeptidase A; KEGG: sse:Ssed_2057 peptidyl-dipeptidase A.
  
     0.474
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.