STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4279PFAM: aminotransferase class V; KEGG: spl:Spea_3648 aminotransferase class V. (462 aa)    
Predicted Functional Partners:
Swoo_1777
FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
 
 0.966
Swoo_0858
PFAM: Fe-S metabolism associated SufE; KEGG: sse:Ssed_0853 Fe-S metabolism associated SufE.
 
 
 0.866
Swoo_3484
KEGG: sse:Ssed_3335 hypothetical protein.
    
   0.767
Swoo_0614
KEGG: ppr:PBPRA2504 hypothetical protein.
  
     0.584
Swoo_0607
KEGG: ppr:PBPRA2498 hypothetical protein.
  
     0.561
Swoo_2371
KEGG: vpa:VPA0447 hypothetical protein.
 
     0.515
Swoo_0564
PFAM: polysaccharide deacetylase; Carbohydrate-binding family V/XII; KEGG: vha:VIBHAR_03626 hypothetical protein.
 
   
 0.504
Swoo_0566
PFAM: aminotransferase class V; beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: slo:Shew_3354 aminotransferase, class V.
     
 0.476
Swoo_4856
KEGG: sse:Ssed_4455 hypothetical protein.
  
     0.474
nfuA
IscR-regulated protein YhgI; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
 
 0.448
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.