STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4281SMART: extracellular solute-binding protein family 3; KEGG: spl:Spea_3650 extracellular solute-binding protein family 3. (310 aa)    
Predicted Functional Partners:
Swoo_4280
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: spl:Spea_3649 diguanylate cyclase/phosphodiesterase.
 
     0.816
Swoo_0614
KEGG: ppr:PBPRA2504 hypothetical protein.
  
     0.524
Swoo_0607
KEGG: ppr:PBPRA2498 hypothetical protein.
  
     0.518
Swoo_2371
KEGG: vpa:VPA0447 hypothetical protein.
  
     0.481
Swoo_3597
KEGG: spl:Spea_2434 hypothetical protein.
  
     0.477
Swoo_2470
PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: ppr:PBPRA2462 hypothetical protein.
  
     0.417
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.