Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4289PFAM: monooxygenase FAD-binding; tryptophan halogenase; KEGG: ccr:CC_0555 hypothetical protein. (372 aa)    
Predicted Functional Partners:
Swoo_4290
KEGG: ccr:CC_0556 hypothetical protein.
 
     0.952
Swoo_4291
KEGG: ccr:CC_0557 hypothetical protein.
 
     0.897
Swoo_4605
PFAM: Patched family protein; KEGG: sse:Ssed_0316 hypothetical protein.
 
   
 0.674
Swoo_4596
KEGG: sfr:Sfri_0352 hypothetical protein.
 
  
 0.668
Swoo_4594
KEGG: sse:Ssed_0327 hypothetical protein.
 
   
 0.600
Swoo_3236
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: sse:Ssed_1445 electron transfer flavoprotein beta-subunit.
  
 
 0.566
Swoo_4601
PFAM: glycosyl transferase family 2; lipid A biosynthesis acyltransferase; KEGG: sse:Ssed_0320 glycosyl transferase, family 2.
 
   
 0.549
Swoo_4794
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.529
Swoo_4599
KEGG: sse:Ssed_0322 hypothetical protein.
 
     0.513
Swoo_4595
PFAM: phospholipid/glycerol acyltransferase; KEGG: sse:Ssed_0326 phospholipid/glycerol acyltransferase.
 
     0.491
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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