Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4290KEGG: ccr:CC_0556 hypothetical protein. (700 aa)    
Predicted Functional Partners:
Swoo_4289
PFAM: monooxygenase FAD-binding; tryptophan halogenase; KEGG: ccr:CC_0555 hypothetical protein.
 
     0.952
Swoo_4291
KEGG: ccr:CC_0557 hypothetical protein.
 
     0.935
Swoo_0837
KEGG: sbl:Sbal_0644 hypothetical protein.
 
     0.675
Swoo_3173
PFAM: Tail Collar domain protein; KEGG: hau:Haur_4954 tail collar domain protein.
  
     0.439
Swoo_2201
Glucan 1,4-alpha-glucosidase; PFAM: glycoside hydrolase 15-related; Glucodextranase N; KEGG: slo:Shew_1873 glucan 1,4-alpha-glucosidase.
  
     0.412
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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