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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4297KEGG: shm:Shewmr7_0124 hypothetical protein; Belongs to the BI1 family. (219 aa)    
Predicted Functional Partners:
Swoo_4177
KEGG: sse:Ssed_0791 hypothetical protein.
  
     0.731
Swoo_3446
PFAM: YfaZ family protein; KEGG: sse:Ssed_3297 YfaZ family protein.
  
     0.698
Swoo_4007
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: spl:Spea_3330 biopolymer transport protein ExbD/TolR.
  
     0.696
Swoo_3089
KEGG: sse:Ssed_1563 hypothetical protein; Belongs to the UPF0319 family.
  
     0.621
Swoo_3550
PFAM: nucleoside-specific channel-forming protein Tsx; KEGG: son:SO_1215 outer membrane protein OmpK, putative.
  
     0.599
Swoo_0092
KEGG: sse:Ssed_0129 hypothetical protein.
  
     0.583
Swoo_4298
Hypothetical protein.
       0.558
Swoo_0909
KEGG: sse:Ssed_3511 hypothetical protein.
  
     0.553
Swoo_3140
PFAM: branched-chain amino acid transport; KEGG: shm:Shewmr7_2596 branched-chain amino acid transport.
  
     0.528
Swoo_2121
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_2495 integral membrane sensor signal transduction histidine kinase.
  
     0.518
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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