Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4314TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_0630 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (360 aa)    
Predicted Functional Partners:
Swoo_4315
PFAM: acriflavin resistance protein; KEGG: sse:Ssed_0629 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.966
Swoo_4145
PFAM: acriflavin resistance protein; KEGG: vvy:VV1397 transporter, AcrB/D/F family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.859
Swoo_4850
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pha:PSHAa2826 substate-binding protein involved in drug resistance; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
  0.844
Swoo_4768
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sse:Ssed_4376 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
  0.833
Swoo_2020
PFAM: secretion protein HlyD family protein; KEGG: sde:Sde_1756 acriflavin resistance protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
  0.797
Swoo_4195
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: sse:Ssed_0774 type I secretion outer membrane protein, TolC family.
 
 0.776
Swoo_1357
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: spl:Spea_1151 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family.
 
   0.762
Swoo_2468
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sse:Ssed_2167 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
  0.701
Swoo_1569
PFAM: acriflavin resistance protein; KEGG: sse:Ssed_3113 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.690
Swoo_0474
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: sse:Ssed_4142 type I secretion outer membrane protein, TolC family.
  
 0.676
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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