STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4320Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: sse:Ssed_0632 DNA-binding protein. (181 aa)    
Predicted Functional Partners:
Swoo_1128
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: sse:Ssed_1058 transcriptional regulator, XRE family.
 
 
0.626
Swoo_4319
KEGG: sse:Ssed_0633 hypothetical protein.
       0.498
Swoo_4839
Transcriptional regulator, histidine utilization repressor, GntR family; TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sse:Ssed_4448 transcriptional regulator, histidine utilization repressor, GntR family.
  
  
 0.471
Swoo_3044
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sse:Ssed_1608 transcriptional regulator, XRE family.
  
  
 0.447
Swoo_3259
KEGG: cps:CPS_2688 hypothetical protein.
  
     0.428
Swoo_0495
PFAM: HipA domain protein; KEGG: spe:Spro_4311 HipA domain protein.
   
 
 0.422
Swoo_0497
TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: spl:Spea_3846 HipA domain protein.
   
 
 0.422
Swoo_4328
CheC, inhibitor of MCP methylation; PFAM: response regulator receiver; KEGG: sse:Ssed_0622 response regulator receiver protein.
   
   0.422
Swoo_4571
TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: sse:Ssed_0375 HipA domain protein.
   
 
 0.422
Swoo_4573
TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: sbm:Shew185_1871 HipA domain protein.
   
 
 0.422
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.