STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4332PFAM: ABC-3 protein; KEGG: sse:Ssed_0618 ABC-3 protein. (265 aa)    
Predicted Functional Partners:
Swoo_4333
PFAM: periplasmic solute binding protein; KEGG: sse:Ssed_0617 periplasmic solute binding protein.
 
  
 0.990
Swoo_4334
KEGG: sse:Ssed_0616 hypothetical protein.
 
     0.910
Swoo_0232
KEGG: sse:Ssed_0228 outer membrane protein.
  
     0.618
Swoo_0905
KEGG: sse:Ssed_3515 putative manganese transporter.
   
  
 0.609
Swoo_3408
PFAM: natural resistance-associated macrophage protein; KEGG: gfo:GFO_2124 manganese transport protein MntH.
   
  
 0.609
Swoo_3699
PFAM: CBS domain containing protein; transporter-associated region; KEGG: sse:Ssed_3474 CBS domain containing protein.
      
 0.605
Swoo_0910
KEGG: sse:Ssed_3510 hypothetical protein.
  
     0.600
Swoo_3124
KEGG: spl:Spea_2697 decaheme cytochrome c.
  
     0.581
Swoo_3127
KEGG: sse:Ssed_1523 outer membrane protein precursor MtrB.
  
     0.579
fur
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: sse:Ssed_2810 ferric uptake regulator, Fur family; Belongs to the Fur family.
  
  
 0.573
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.