Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4332PFAM: ABC-3 protein; KEGG: sse:Ssed_0618 ABC-3 protein. (265 aa)    
Predicted Functional Partners:
Swoo_4333
PFAM: periplasmic solute binding protein; KEGG: sse:Ssed_0617 periplasmic solute binding protein.
 
  
 0.988
Swoo_4334
KEGG: sse:Ssed_0616 hypothetical protein.
 
     0.921
Swoo_0232
KEGG: sse:Ssed_0228 outer membrane protein.
  
     0.618
Swoo_0910
KEGG: sse:Ssed_3510 hypothetical protein.
  
     0.600
Swoo_3124
KEGG: spl:Spea_2697 decaheme cytochrome c.
  
    0.581
Swoo_3127
KEGG: sse:Ssed_1523 outer membrane protein precursor MtrB.
  
     0.579
Swoo_4467
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0489 transcriptional regulator, CadC.
  
     0.557
Swoo_4254
KEGG: sse:Ssed_3588 decaheme cytochrome c.
  
    0.553
fur
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: sse:Ssed_2810 ferric uptake regulator, Fur family; Belongs to the Fur family.
  
  
 0.512
Swoo_4331
KEGG: sse:Ssed_0619 1-acylglycerol-3-phosphate O-acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
       0.478
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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