STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4334KEGG: sse:Ssed_0616 hypothetical protein. (403 aa)    
Predicted Functional Partners:
Swoo_4333
PFAM: periplasmic solute binding protein; KEGG: sse:Ssed_0617 periplasmic solute binding protein.
 
     0.952
Swoo_4332
PFAM: ABC-3 protein; KEGG: sse:Ssed_0618 ABC-3 protein.
 
     0.910
Swoo_0910
KEGG: sse:Ssed_3510 hypothetical protein.
  
     0.667
Swoo_0232
KEGG: sse:Ssed_0228 outer membrane protein.
  
     0.653
Swoo_3124
KEGG: spl:Spea_2697 decaheme cytochrome c.
  
     0.642
Swoo_0925
KEGG: sse:Ssed_0827 hypothetical protein.
  
     0.639
Swoo_4254
KEGG: sse:Ssed_3588 decaheme cytochrome c.
  
     0.634
Swoo_1267
TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: sse:Ssed_1172 Trp operon repressor.
  
     0.620
Swoo_3127
KEGG: sse:Ssed_1523 outer membrane protein precursor MtrB.
  
     0.587
Swoo_4467
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0489 transcriptional regulator, CadC.
  
     0.568
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.