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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4344KEGG: sse:Ssed_0608 hypothetical protein. (103 aa)    
Predicted Functional Partners:
Swoo_1710
KEGG: sse:Ssed_2935 hypothetical protein.
  
     0.754
Swoo_1812
KEGG: sse:Ssed_2832 hypothetical protein.
  
     0.753
Swoo_0725
PFAM: protein of unknown function DUF350; KEGG: sse:Ssed_3835 protein of unknown function DUF350.
  
     0.750
Swoo_2414
KEGG: sse:Ssed_2222 hypothetical protein.
  
     0.735
bamC
NlpBDapX family lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.734
Swoo_2167
KEGG: sse:Ssed_2439 hypothetical protein.
  
     0.733
Swoo_2296
KEGG: sse:Ssed_2314 hypothetical protein.
  
     0.731
Swoo_3035
KEGG: sse:Ssed_1620 hypothetical protein.
  
     0.724
Swoo_1223
PFAM: Hpt domain protein; KEGG: sse:Ssed_1128 Hpt protein.
  
     0.723
Swoo_3541
PFAM: type IV pilus assembly PilZ; KEGG: sse:Ssed_3371 type IV pilus assembly PilZ.
  
     0.720
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.