STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4346KEGG: sse:Ssed_0607 hypothetical protein. (174 aa)    
Predicted Functional Partners:
Swoo_2296
KEGG: sse:Ssed_2314 hypothetical protein.
  
     0.765
Swoo_1323
KEGG: sse:Ssed_1223 hypothetical protein.
  
     0.752
Swoo_2146
KEGG: sse:Ssed_2470 hypothetical protein.
  
     0.732
Swoo_2888
KEGG: sse:Ssed_1703 hypothetical protein.
  
     0.727
Swoo_3296
KEGG: spl:Spea_2898 conserved hypothetical protein.
  
     0.724
Swoo_3461
KEGG: sse:Ssed_3312 hypothetical protein.
  
     0.718
Swoo_3074
SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_1576 tetratricopeptide domain protein.
  
     0.716
Swoo_2709
KEGG: sse:Ssed_1878 hypothetical protein.
  
     0.702
Swoo_2806
PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: saz:Sama_1540 hypothetical protein.
  
     0.692
Swoo_4159
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: spl:Spea_3518 peptidase S9 prolyl oligopeptidase active site domain protein.
  
     0.681
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.