STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4350KEGG: sse:Ssed_0603 hypothetical protein. (169 aa)    
Predicted Functional Partners:
Swoo_3084
PFAM: porin Gram-negative type; KEGG: sse:Ssed_2557 porin, gram-negative type.
  
     0.765
Swoo_0654
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: sse:Ssed_0808 putative signal transduction protein.
  
     0.732
Swoo_0101
PFAM: Paraquat-inducible protein A; KEGG: sse:Ssed_0138 paraquat-inducible protein A.
  
     0.689
Swoo_3375
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sse:Ssed_3242 TonB-dependent receptor.
  
    0.676
Swoo_2146
KEGG: sse:Ssed_2470 hypothetical protein.
  
     0.668
Swoo_3866
KEGG: sbl:Sbal_0917 hypothetical protein.
  
     0.661
Swoo_0932
KEGG: sse:Ssed_0833 hypothetical protein.
  
    0.635
Swoo_4467
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: spl:Spea_0489 transcriptional regulator, CadC.
  
     0.629
Swoo_0342
PFAM: Sporulation domain protein; KEGG: sse:Ssed_4263 sporulation domain protein.
  
     0.625
Swoo_0551
KEGG: sse:Ssed_4086 hypothetical protein.
  
     0.622
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.