STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4357PFAM: carbohydrate kinase FGGY; KEGG: sse:Ssed_0596 sugar (pentulose and hexulose) kinase. (528 aa)    
Predicted Functional Partners:
Swoo_4359
Alkylglycerone-phosphate synthase; PFAM: FAD linked oxidase domain protein; KEGG: sse:Ssed_0594 FAD linked oxidase domain protein.
 
   
 0.947
Swoo_4358
PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_0595 FAD dependent oxidoreductase.
  
 0.943
Swoo_0346
PFAM: ribulose-phosphate 3-epimerase; KEGG: sse:Ssed_4259 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.930
Swoo_4360
Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sse:Ssed_0593 putative transcriptional regulator.
 
   
 0.670
Swoo_0935
PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_0836 FAD dependent oxidoreductase.
  
 0.520
Swoo_4356
KEGG: pca:Pcar_2459 hypothetical protein.
       0.464
Swoo_2887
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.430
Swoo_3133
PFAM: Gluconate transporter; Citrate transporter; KEGG: sse:Ssed_2778 gluconate transporter.
  
  
 0.416
Swoo_2534
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sse:Ssed_2075 cation diffusion facilitator family transporter.
   
    0.412
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
 
 0.408
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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