STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4360Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sse:Ssed_0593 putative transcriptional regulator. (345 aa)    
Predicted Functional Partners:
Swoo_0183
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sse:Ssed_0203 conserved hypothetical AraC-type transcriptional regulator.
  
     0.767
Swoo_4359
Alkylglycerone-phosphate synthase; PFAM: FAD linked oxidase domain protein; KEGG: sse:Ssed_0594 FAD linked oxidase domain protein.
 
     0.762
Swoo_4357
PFAM: carbohydrate kinase FGGY; KEGG: sse:Ssed_0596 sugar (pentulose and hexulose) kinase.
 
   
 0.670
Swoo_4358
PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_0595 FAD dependent oxidoreductase.
 
     0.615
Swoo_2858
PFAM: regulatory protein TetR; KEGG: sse:Ssed_1720 putative transcriptional regulator, TetR family.
  
    0.567
Swoo_4361
PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_0587 hypothetical protein.
       0.532
Swoo_4362
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_0586 ABC transporter-related protein.
       0.532
Swoo_4363
PFAM: ABC-2 type transporter; KEGG: sse:Ssed_0585 ABC-2 type transporter.
       0.532
Swoo_2405
Molydopterin dinucleotide-binding region; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hau:Haur_2925 molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
     0.492
Swoo_0420
KEGG: mkm:Mkms_2796 hypothetical protein.
  
     0.410
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.