STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4367PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_3738 hypothetical protein. (493 aa)    
Predicted Functional Partners:
Swoo_4379
PFAM: glycoside hydrolase family 17; KEGG: cps:CPS_3721 putative glycosyl hydrolase.
 
     0.959
Swoo_4378
KEGG: cps:CPS_3722 hypothetical protein.
 
     0.762
Swoo_4380
PFAM: glycoside hydrolase family 17; KEGG: cps:CPS_3720 putative glycosyl hydrolase.
  
     0.705
Swoo_4365
PFAM: glycoside hydrolase family 3 domain protein; KEGG: cps:CPS_3740 putative endoglucanase A.
 
     0.581
Swoo_4366
PFAM: glycoside hydrolase family 3 domain protein; KEGG: cps:CPS_3739 periplasmic beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
 
     0.575
Swoo_2769
KEGG: slo:Shew_1487 hypothetical protein.
  
 
 0.496
Swoo_1436
Beta-phosphoglucomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cps:CPS_0979 putative beta-phosphoglucomutase.
 
  
 0.451
Swoo_2773
PFAM: protein of unknown function DUF1365; KEGG: slo:Shew_1483 protein of unknown function DUF1365.
  
  
 0.451
Swoo_4368
KEGG: sdn:Sden_0133 hypothetical protein.
       0.438
Swoo_1046
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ilo:IL1591 glyoxalase/dioxygenase superfamily protein.
  
     0.427
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.