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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4370TIGRFAM: YD repeat protein; KEGG: hne:HNE_2526 putative wall-associated protein. (869 aa)    
Predicted Functional Partners:
Swoo_4369
KEGG: hne:HNE_2525 hypothetical protein.
       0.773
Swoo_4371
KEGG: sbn:Sbal195_4404 hypothetical protein.
       0.714
Swoo_4368
KEGG: sdn:Sden_0133 hypothetical protein.
       0.563
Swoo_0597
KEGG: shw:Sputw3181_0736 hypothetical protein.
  
     0.464
Swoo_4091
KEGG: vha:VIBHAR_01747 hypothetical protein.
 
     0.425
Swoo_1664
PFAM: sugar transferase; KEGG: sdn:Sden_2648 undecaprenyl-phosphate galactosephosphotransferase.
   
    0.420
Swoo_1694
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: sse:Ssed_2951 glycosyl transferase, WecB/TagA/CpsF family; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; glycosyl transferase WecB/TagA/CpsF.
   
    0.420
Swoo_1457
TIGRFAM: YD repeat protein; KEGG: sdn:Sden_0132 YD repeat.
  
     0.412
Swoo_1859
PFAM: Forkhead-associated protein; KEGG: cps:CPS_0998 FHA domain protein.
 
    0.411
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.