Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Swoo_4374PFAM: Ig family protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: pin:Ping_0555 carbohydrate-binding CenC domain protein. (731 aa)    
Predicted Functional Partners:
Swoo_4375
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_1397 TonB-dependent receptor.
 
     0.714
Swoo_3044
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sse:Ssed_1608 transcriptional regulator, XRE family.
  
     0.621
Swoo_4376
PFAM: glycoside hydrolase family 16; KEGG: saz:Sama_1396 glucan endo-1,3-beta-D-glucosidase.
 
    
0.490
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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