STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4376PFAM: glycoside hydrolase family 16; KEGG: saz:Sama_1396 glucan endo-1,3-beta-D-glucosidase. (912 aa)    
Predicted Functional Partners:
Swoo_4375
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_1397 TonB-dependent receptor.
 
     0.890
Swoo_1149
PFAM: glycoside hydrolase family 3 domain protein; KEGG: sbl:Sbal_1133 beta-glucosidase.
 
   
 0.632
Swoo_3316
KEGG: sse:Ssed_1338 hypothetical protein.
  
     0.513
Swoo_2296
KEGG: sse:Ssed_2314 hypothetical protein.
  
     0.507
Swoo_4374
PFAM: Ig family protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: pin:Ping_0555 carbohydrate-binding CenC domain protein.
 
    
0.491
Swoo_3294
PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_3173 GCN5-related N-acetyltransferase.
  
     0.482
Swoo_3836
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sde:Sde_2390 argininosuccinate synthase.
 
     0.482
Swoo_4365
PFAM: glycoside hydrolase family 3 domain protein; KEGG: cps:CPS_3740 putative endoglucanase A.
 
   
 0.481
Swoo_2206
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: slo:Shew_1886 alpha amylase, catalytic region.
  
   
 0.468
Swoo_3643
KEGG: sse:Ssed_3441 hypothetical protein.
  
     0.462
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.