Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Swoo_4377PFAM: glycoside hydrolase family 16; KEGG: cps:CPS_3723 beta-glucanase. (469 aa)    
Predicted Functional Partners:
Swoo_4378
KEGG: cps:CPS_3722 hypothetical protein.
 
     0.748
Swoo_4365
PFAM: glycoside hydrolase family 3 domain protein; KEGG: cps:CPS_3740 putative endoglucanase A.
 
  
 0.668
Swoo_4380
PFAM: glycoside hydrolase family 17; KEGG: cps:CPS_3720 putative glycosyl hydrolase.
     0.659
Swoo_1149
PFAM: glycoside hydrolase family 3 domain protein; KEGG: sbl:Sbal_1133 beta-glucosidase.
 
  
 0.610
Swoo_4379
PFAM: glycoside hydrolase family 17; KEGG: cps:CPS_3721 putative glycosyl hydrolase.
 
     0.607
Swoo_4366
PFAM: glycoside hydrolase family 3 domain protein; KEGG: cps:CPS_3739 periplasmic beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
  
 0.563
Swoo_3058
Beta-glucosidase; PFAM: glycoside hydrolase family 3 domain protein; KEGG: sde:Sde_2674 ribosome-binding factor A.
 
  
 0.510
Swoo_2207
PFAM: alpha amylase catalytic region; Cyclomaltodextrinase; SMART: alpha amylase catalytic sub domain; KEGG: shm:Shewmr7_2211 alpha amylase, catalytic region; Belongs to the glycosyl hydrolase 13 family.
  
   
 0.455
Swoo_4381
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: cps:CPS_3719 sensor histidine kinase.
 
     0.414
Swoo_0561
Beta-N-acetylhexosaminidase; PFAM: Carbohydrate-binding chitobiase/hexosaminidase-type domain protein; Beta-N-acetylhexosaminidase-like; Glycoside hydrolase, family 20, catalytic core; KEGG: sbn:Sbal195_1432 beta-N-acetylhexosaminidase.
  
     0.408
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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