Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4378KEGG: cps:CPS_3722 hypothetical protein. (1147 aa)    
Predicted Functional Partners:
Swoo_4379
PFAM: glycoside hydrolase family 17; KEGG: cps:CPS_3721 putative glycosyl hydrolase.
 
     0.908
Swoo_4380
PFAM: glycoside hydrolase family 17; KEGG: cps:CPS_3720 putative glycosyl hydrolase.
 
     0.895
Swoo_4367
PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_3738 hypothetical protein.
 
     0.758
Swoo_4377
PFAM: glycoside hydrolase family 16; KEGG: cps:CPS_3723 beta-glucanase.
 
     0.748
Swoo_0898
KEGG: mmr:Mmar10_1711 coenzyme PQQ synthesis protein B.
  
     0.475
Swoo_1398
KEGG: cps:CPS_2707 putative lipoprotein.
  
     0.472
Swoo_1085
KEGG: cps:CPS_2167 hypothetical protein.
  
     0.469
Swoo_1046
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ilo:IL1591 glyoxalase/dioxygenase superfamily protein.
  
     0.439
Swoo_4381
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: cps:CPS_3719 sensor histidine kinase.
       0.421
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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