STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4380PFAM: glycoside hydrolase family 17; KEGG: cps:CPS_3720 putative glycosyl hydrolase. (321 aa)    
Predicted Functional Partners:
Swoo_4379
PFAM: glycoside hydrolase family 17; KEGG: cps:CPS_3721 putative glycosyl hydrolase.
 
  
 
0.977
Swoo_4365
PFAM: glycoside hydrolase family 3 domain protein; KEGG: cps:CPS_3740 putative endoglucanase A.
  
  
  0.913
Swoo_4366
PFAM: glycoside hydrolase family 3 domain protein; KEGG: cps:CPS_3739 periplasmic beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
  
  
  0.912
Swoo_1147
Beta-galactosidase; KEGG: sbl:Sbal_1131 beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1.
     
  0.900
Swoo_1149
PFAM: glycoside hydrolase family 3 domain protein; KEGG: sbl:Sbal_1133 beta-glucosidase.
     
  0.900
Swoo_2210
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sfr:Sfri_1788 alpha amylase, catalytic region.
     
  0.900
Swoo_3058
Beta-glucosidase; PFAM: glycoside hydrolase family 3 domain protein; KEGG: sde:Sde_2674 ribosome-binding factor A.
     
  0.900
Swoo_4378
KEGG: cps:CPS_3722 hypothetical protein.
 
     0.889
Swoo_4367
PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_3738 hypothetical protein.
  
     0.705
Swoo_4377
PFAM: glycoside hydrolase family 16; KEGG: cps:CPS_3723 beta-glucanase.
     0.660
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.