STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4380PFAM: glycoside hydrolase family 17; KEGG: cps:CPS_3720 putative glycosyl hydrolase. (321 aa)    
Predicted Functional Partners:
Swoo_4378
KEGG: cps:CPS_3722 hypothetical protein.
 
     0.895
Swoo_4379
PFAM: glycoside hydrolase family 17; KEGG: cps:CPS_3721 putative glycosyl hydrolase.
 
    
0.795
Swoo_4367
PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_3738 hypothetical protein.
  
     0.705
Swoo_4377
PFAM: glycoside hydrolase family 16; KEGG: cps:CPS_3723 beta-glucanase.
     0.659
Swoo_4381
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: cps:CPS_3719 sensor histidine kinase.
       0.568
Swoo_3857
KEGG: sfr:Sfri_3645 putative lipoprotein.
  
     0.552
Swoo_1398
KEGG: cps:CPS_2707 putative lipoprotein.
  
     0.516
Swoo_4382
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: cps:CPS_3718 response regulator.
       0.506
Swoo_1517
PFAM: DoxX family protein; KEGG: vfi:VFA0336 hypothetical membrane spanning protein.
  
     0.487
Swoo_3000
KEGG: sse:Ssed_3543 hypothetical protein.
  
     0.428
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.